I checked for a nice document organizer for Ubuntu on Internet and I got some apps too.but the problem with them was that either it does not support adding files from hard drive (ie only useful while online) or written in java.
My search for a perfect one ended in Referencer, the gnome document organizer.
Features:
* add documents or entire folders
* can index verity of file formats
* tag files
* highlight tags based on number of contents
* thumbnail view of files
Remember, these are features only for an average end-user.Actually Referencer has got seamless capabilities as themselves telling they "designed with the scientist/researcher in mind"!
Homepage:
http://icculus.org/referencer/index.html
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